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Free software download

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Currently Supported Software
	Download	Description
	Go to the ShapeWorks webpage	ShapeWorks software is an open-source distribution (initially developped by the SCI Institute) of a new method for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on any specific surface parameterization: Data preprocessing Group-wise particle-based shape correspondence Data visualization
	Go to the DTIPrep webpage	DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation: Image/diffusion information check Interlace-wise and gradient-wise intensity and motion check Head motion and Eddy current artifact correction DTI computation
	Go to the AutoSeg webpage	AutoSeg is an end-to-end application that performs automatic brain tissue classification and structural segmentation: Atlas-based EM tissue segmentation Atlas-based subcortical structure segmentation and lobar parcellation Regional histogram analysis
	Go to the GAMBIT webpage	GAMBIT is an end-to-end application allowing Group-wise Automatic Mesh-Based analysis of cortIcal Thickness as well as other surface area measurements: Voxel-based cortical thickness White matter cortical surface creation and inflation Group-wise shape correspondence using ShapeWorks
	Go to the ARCTIC webpage	ARCTIC (Automatic Regional Cortical ThICkness) is a cross-platform end-to-end application allowing individual analysis of cortical thickness. It can be run within Slicer3 as an external module or directly as a command line: Brain tissue segmentation Lobar cortical thickness analysis White and gray matter mesh creation
	UNC Cortical Thickness	UNC Cortical Thickness Analysis based on ITK
	NITRC SPHARM PDM page Local SPHARM shape analysis page	The SPHARM shape analysis toolset is used for doing local statistical shape analysis. ITK based.
	Go to the FiberTracking webpage	The FT tool is a cross-platform system to explore diffusion tensor images and to reconstruct fiber tracts: Platform independent Fiber tracts between ROI FA and ADC generation
	Go to the DTIChecker webpage	DTIChecker is a program to check and correct DTI images Slice artifacts detection Motion artifacts detection and correction Average creation
	Go to the MeshValmet webpage	MeshValmet surface difference evaluation tool
	Go to the Insight SNAP webpage	Insight SNAP is an evolution of the SNAP tool : Region-probability snake (competition snake). Propagation snake stopping at region discontinuities. Region of interest painting.
	Go to the itkEMS webpage	itkEMS is a program to segment brain tissue Multi channel support Fast EM segmentation XML support for parameters
	Go to the FiberViewer webpage	Fiber Viewer is a program to analyze fibers extracted from the Fiber Tracking tool. It provides: Several methods for clustering Tools for manipulate fibers Methods to analyse FA and ADC along fibers
	Go to the MriWatcher webpage	MriWatcher is a vizualisation tool for MRI images (.gipl,.mha,.hdr). Coupled cursors to show the differences between images Load an overlay images Screenshot
	Go to the Head Circumference webpage	Program which compute head circuference based on a 3D image Use Fourier harmonics to parametrize de contour Embedded tutorial Store results in an excel spreadsheet automatically
	Go to the Imagine webpage	Program which create dynamic pipeline Up to 20 filters (included affine registration and fluid warping) Easy to use and to parametrize Wizard assistant for running pipeline automatically
	Go to the Intensity Rescaler webpage	Program which rescale image in intensity Intensity rescaling based on segmentation User can define regions dynamically Automatic transfert function generation

Discontinued Software
	Download	Description
	Go to the DofView webpage	DofView is a tool used to analysis Deformation Field created by the WarpTool or AtlasBuilder software. Several measurement: Jacobian, Divergence ... Convert Linux/Solaris DoF to Windows (Imagine) DOF 3D display of the deformation field
	Go to the Byu2vox webpage	Byu2Vox is a program that convert a BYU surface to a voxel volume. Specification of the bounding box Multi-images processing (batch mode)
	Go to the Iris webpage	IRIS is intended help doctors to create 3D models of structures within the brain: Displays the data in 4 windows. Build a 3D model of a structure from any volumetric data set Drawing tools
	Go to the Snap webpage	Snake Automatic Partitioning: Region-probability snake (competition snake). Propagation snake stopping at region discontinuities. Region of interest painting.
	Go to the Valmet webpage	Valmet is a tool to improve segmentations. Valmet used several algorithms to compare segmentations in 2D and 3D: Complex algortihms implemented Dynamic 2D and 3D vizualisation Differences color display along the surface
	Go to the imconvert webpage	Program which convert .gipl .hdr .raw . v0 .mha images Select input/output type Select patient orientation Graphic user interface (very usefull under Windows)

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